Life Sciences Research

Undergraduate Research in the Life Sciences

2018 Life and Environmental Sciences Course-based Research Projects

This 2018 collection includes Carroll College undergraduate student research papers and projects in Life and Environmental Sciences. Life and Environmental Sciences Course-based Research Projects

Infectious Disease Ecology

Dr. Grant Hokit, Dr. Sam Alvey, and Dr. Jennifer Glowienka
Students working with the West Nile VirusFor the past three years, we have been funded by MT INBRE to study West Nile virus in Montana.  Since 1999 West Nile virus (WNV) has spread across the North American continent in a heterogeneous manner creating “hot spots” of increased infection risk for humans and animals. The distribution of hot spots is poorly understood but may be driven by geographic, climatic and biological factors that determine the distribution of bridge vectors (Culex mosquitoes) and amplifying hosts (some bird species). The Carroll WNV team is developing a model of WNV infection risk for the state of Montana.  Students working on this project are involved in a variety of ways.  They may focus on: learning molecular protocols used to test for the presence of WNV, using DNA analytical tools to identify bird hosts from mosquito blood meals, and/or learning techniques to describe the genetic structure of vector and host populations. Additionally, students who enjoy doing field work collect mosquitoes, bird and environmental data so that we can build a predictive model of infection risk. This project allows students the opportunity to work both in the field and in the laboratory and to design their own project directed at answering some of the questions associated with this infectious disease.   Recently, through collaboration with Dr. Greg Johnson at Montana State University, some students have conducted research on other infectious diseases such as heartworm, bluetongue and Cache Valley virus.   The WNV faculty and students have also had the opportunity to collaborate with faculty and students from three tribal colleges: Little Big Horn College, Chief Dull Knife College, and Aaniiih Nakoda College.

We were recently awarded a four-year grant from the Howard Hughes Medical Institute (HHMI; see the award announcement at HHMI or the Carroll Press Release).  The overarching objective of the HHMI funded project is to improve our ability to prepare students for biomedical research careers, to strengthen collaborations with tribal colleges, and to provide analysis of infectious diseases relevant to the Montana region.

Student setting up experiment in a fieldWith this HHMI funding we will: 1) formalize the ongoing collaboration associated with the WNV project into a network of cooperating faculty, tribal leaders, state and county public health officials, livestock and wildlife officials that will expand the focus beyond WNV to other infectious diseases of relevance to Montana; 2) train undergraduate students to use spatial analysis, molecular, and bioinformatic tools for the purpose of conducting a spatial epidemiological investigation.  A primary goal of epidemiology is to understand the cause and consequences of the spatiotemporal heterogeneity of infectious diseases. Particularly for zoonoses, many ecological processes such as dispersal, population dynamics, and niche limitations can determine the distribution and abundance of vector and reservoir species, and consequently influence the distribution of pathogens. With the proliferation of GIS, it is now possible to create high resolution, spatially explicit risk models for studying the spatiotemporal heterogeneity of many infectious diseases; and 3) implement a digitized, web-based version of our BI/CH 477 Thesis Writing capstone course INBRE Students showing their researchon written and oral presentation of scientific information.  The web-based version of the course will be accessible to students from Carroll and elsewhere. Significant findings and relevant monitoring data will be submitted for publication in peer-reviewed journals, presented at scientific conferences, and forwarded to state health officials.

2015-2016 research students: Indy Bains, Brianna Buduan, Hanna Dotson, Jake Fiocchi, Kyle Griffith, Nick Hensley, Zeke Koslosky

Funding sources: Montana INBRE and the Howard Hughes Medical Institute (HHMI)

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Molecular Neurobiology

Dr. Stefanie Otto-Hitt
Students in LabThe brain is composed of billions of cells, called neurons, which communicate and transmit electrical signals at specialized sites of cell-to-cell contact, called synapses.  Presynaptic neurons transmit their information, in the form of neurotransmitter-filled synaptic vesicles, to postsynaptic neurons, which receive this information through a variety of receptor proteins expressed on the cell surface.  For example, postsynaptic AMPA receptors bind the excitatory neurotransmitter glutamate, which results in increased excitation of the postsynaptic neuron.  This mechanism of communication between a pre- and postsynaptic neuron governs the majority of excitatory synaptic transmission in the brain and is a key component of synaptic plasticity, a phenomenon referring to the remarkable ability of neurons to alter the strength of their communication.

Students during LabAt the synapse, AMPA receptors exist as tetrameric assemblies comprised of four distinct subunits: GluA1, GluA2, GluA3 and GluA4.  Synaptic plasticity is regulated, in part, by activity-dependent variation in the number of postsynaptic GluA2-containing AMPA receptors. However, the proteins that regulate AMPA receptor trafficking at the synapse and the fundamental role this trafficking plays in synaptic plasticity remains largely unknown.  Furthermore, even less is known about the mechanisms underlying transcriptional regulation of GluA2 expression and whether synaptic activity influences its rate of transcription.  The goals of my lab are to (1) Identify and characterize novel GluA2-interacting proteins that regulate the trafficking of AMPA receptors at synapses and (2) Identify and characterize the transcriptional regulators of GluA2 expression.

2015-2016 research students: Leah Esposito, John Brothers

Funding sources: Private donations to the Biochemistry/Molecular Biology research fund, and the M. J. Murdock Charitable Trust

Fungal infectious disease in amphibians

Dr. Brandon Sheafor
The amphibian research largely focuses on Panamanian golden frogs (Atelopus zeteki), a critically endangered species that is now extinct in the wild due to the fungal disease chytridiomycosis.  Amphibians largely protect Students studying diseases in classthemselves from skin infections like chytridiomycosis by excreting compounds that are able to inhibit growth of bacteria and fungi. I have been working with zoos that have captive golden frog populations in an attempt to find a way to selectively breed frogs that will produce more effective skin secretions and, therefore, make the frogs more resistant to the fungal infection.  If successful, this research could be a model for how to mitigate amphibian decline.  However, unlike most other amphibians, golden frogs do not produce peptides for protective purposes, but appear to make other, novel compounds.  I have collected skin secretions from hundreds of captive golden frogs and, over the last year, we have been attempting to identify the non-peptide compound(s) in the skin secretions which are responsible for the in vitro inhibition of the deadly fungus. So far, we have identified one potentially important compound, isosorbide, and are currently refining techniques in order to find more.  Projects are also underway to determine if the effectiveness of skin secretions is a heritable trait and, therefore, able to be used in captive breeding programs selecting for resistance to chytridiomycosis.  Finally, we do not have a strong understanding of how the fungus kills its amphibian host. Research is currently being performed to determine how the infection disrupts metabolism and respiration.

Effects of climate change on the physiology of North American pikas

Dr. Brandon Sheafor
North American pikas are small relatives of rabbits that live at high altitudes (above tree line) throughout the Rocky Mountains.  They are keystone species for the alpine ecosystems which they inhabit.  Over the past decade, many populations of pikas have disappeared in their southern range, especially in the Great Basin Students studying climate change in class area.  These declines have been linked to climate change and the apparent inability of pikas to tolerate even moderately warm temperatures.  We are currently trying to develop a western blot assay that will allow us to quantify the heat shock proteins made by pikas.  This would allow us to identify whether or not climate changes are responsible for the southern declines and can help to identify populations that may be at risk in the future.  It will also provide information that would be extremely valuable to climate modelers who are attempting to predict the effects of climate change on alpine ecosystems.

Funding sources: M. J. Murdock Charitable Trust and the Margaret A. Cargill Foundation of Eden Prairie, MN

Speciation in Black Flies

mike-gerry-reseach.jpgDr. Gerald Shields
My research attempts to describe the details of the speciation process through the study of molecular and chromosome genetics of black flies (Diptera: Simuliidae). Larvae from fresh-water streams provide the means by which we determine relationships based on sex-linked inversions in polytene chromosomes. Moreover, we have tested the validity our chromosome phylogenies (relationships) by comparing the DNAs of chromosome types. These studies tell us, contrary to the majority dogma, that chromosome change is an important and initial process of divergence in these flies. Next year we will study a population known to be the remnant of an early divergence event (Shields and Kratochvil, 2011, Amer. Mid. Naturalist). Research will involve field collection of larvae beginning early in April and chromosomal and molecular analyses of the various types.

2015-2016 research students: Morgan Spear, Chance Stewart, and Shelby Olsen

Chronic Wasting Disease

Dr. Dan Gretch
Prion proteins are thought to cause neurodegenerative disease in humans and in domesticated and free-ranging animals as well.  One such fatal disease is Chronic Wasting Disease in deer and elk.  These diseases can be genetic in nature, arising from mutations in the prion gene.  Alternatively, the diseases are transmissible.  Infectious transmission is thought to stem from misfolded, infectious prion proteins (termed PrP-Sc) contacting normal prion proteins (PrP-C) and inducing them to misfold into infectious forms. 

The goal of the project we are working on is to assess the role of several parameters in prion protein misfolding.  We are examining the following questions: 1) Does disulfide bond formation/rearrangement influence prion misfolding?; 2) Does variation in cellular cholesterol concentration influence prion misfolding?; 3)  Does alteration of prion glycosylation influence prion misfolding?; 4) Does specific allelic variation in the prion gene alter disease susceptibility by altering prion misfolding dynamics?

In vitro conversion studies can be used to monitor the conformational change event that produces infectious prions.  Following incubation of the two isoforms together, PrP-C that is converted to the PrP-Sc form acquires resistance to proteolysis.  Resistance to protease treatment can then be monitored via immunoblotting, and the kinetics of conversion can be assessed under the influence of different experimental variables.

Animal Camouflage

Dr. Dan Gretch
We have developed an animal model to study the biochemical basis of camouflage.  The tobacco hornworm is green in nature, but when fed a laboratory diet, it is blue.  We speculated that the insect derives plant pigments from its diet and transports those pigments to its skin allowing it to blend into its surroundings.   The yellow/orange pigment beta-carotene is a good candidate pigment since its color, when blended with blue, could produce green coloration. 

Carroll student Kevin Semmens has generated both green and blue insects in the laboratory.  Kevin successfully demonstrated that the plant-fed, green insects carry a pigment (spectroscopic analysis suggests that it is beta-carotene) in association with the lipoproteins in their blood stream.  This provided strong evidence that beta-carotene is indeed responsible for the insects camouflage coloration. Kevin is currently testing beta-carotene in associations with other pigments to examine if the pigment absorption and transport processes involved have specificity for beta-carotene.

2015-2016 research students: Ian Lorang and Brad Gretch

Funding sources: M. J. Murdock Cheritable Trust and The Guido Bugni Fund

Carroll College Receives $1 Million Award from Howard Hughes Medical Institute

Carroll College (Helena, Mont.) is pleased to announce that the Howard Hughes Medical Institute (HHMI) has awarded the college $1 million under its Undergraduate Science Education Program for Baccalaureate and Master’s Colleges and Universities. The award will be used over the next four years at Carroll, which will be collaborating with a consortium of three Montana tribal colleges and Montana State University to study infectious disease ecology in Montana. The majority of the grant funds awarded to the college will be used to support summer undergraduate research experiences for students and faculty at Carroll and collaborating colleges. For Carroll, the award builds on existing grant-funded research into West Nile Virus that has been ongoing over the past few years.

For 2012, 47 small US colleges and universities will receive HHMI grants totaling over $50 million. Since 1988, the Howard Hughes Medical Institute (HHMI) has awarded more than $870 million to 274 colleges and universities to support science education. Each four-year grant is in the range of $800,000 to $1.5 million.

HHMI intends recipient schools to work together in creating more engaging science classes, bringing real-world research experiences to students, and increasing the diversity of students who study science. Over the past 25 years, the HHMI has conducted eight rounds of grant awards through this initiative, the purpose of which is to transform education in the life sciences and prepare undergraduates to become the next generation of leaders in science research and medicine.

“HHMI is investing in these schools because they have shown they are superb incubators of new ideas and models that might be replicated by other institutions to improve how science is taught in college,” said Sean B. Carroll, vice president of science education at HHMI. “We know that these schools have engaged faculty. They care deeply about teaching and how effectively their students are learning about science.”

Carroll Professor of Biology Grant Hokit will serve as program director for the Carroll College HHMI award and was the lead in securing this highly competitive funding opportunity. Hokit says Carroll’s current collaborators under the HHMI grant are Chief Dull Knife College, Little Big Horn College, and Aaniiih Nakoda College. Resources under the grant will support six professors and up to 18 students, and Hokit sees potential to form collaborations with additional tribal colleges. In addition to Hokit, Carroll Biology Professors Jennifer Geiger and Sam Alvey will be involved in leading the research projects conducted under the grant. Carroll’s $1 million grant falls under HHMI’s 2012 Persistence of All Students program, to encourage the success in science of students from all backgrounds. Strategies include student research experiences, mini-grants for faculty mentoring, and faculty training.

“Our research model is to use infectious disease ecology—the study of how environmental factors influence disease prevalence--to train faculty and students in molecular techniques, genetic analysis, and spatial epidemiology. With this, we hope to better understand the distribution and risk of human/livestock/wildlife pathogens important to Montana,” Hokit says.

“Pathogens of interest we will be pursing under the HHMI award include West Nile virus, blue tongue, heartworm, Cache Valley virus and others that we can study safely at an undergraduate institution,” Hokit says. The grant will assure the highest quality student research with professor mentors, who will receive HHMI-funded training on molecular techniques necessary to detect pathogens, on genetic analysis of vector and host populations, in spatial epidemiology, and on the use of modeling and technology to map and predict where disease outbreaks are most likely.

For Carroll, this grant is historic, making it one of the largest single monetary grants in the college’s history.

“At the time of our award notification, we learned that we are one of 47 institutions selected for a grant award, and that 182 proposals were submitted by the 215 institutions invited to apply.  We are one of eight schools to receive their first-ever HHMI awards,” says Dr. Paula McNutt, interim Carroll president. “Over the years, the steady support of our many natural sciences department donors and science alumni has enabled Carroll to undertake changes in our science curriculum, enhance science facilities and develop outstanding science faculty, all elements that have, over time, positioned us to be successful in receiving grant awards like this one from HHMI.”

View link of the news release by HHMI.